Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs13333879 | chr16:526435 | C/T | 3.18E-8 | 210 | 10.1 | 6.8 | 2.12 | KM Plot |
| BLCA | rs138977745 | chr18:5271676 | C/T | 8.6E-10 | 212 | 8.7 | 13.33 | 4.85 | KM Plot |
| BLCA | rs139359284 | chr18:5247942 | T/G | 1.02E-8 | 213 | 8.65 | 13.33 | 4.85 | KM Plot |
| BLCA | rs139947274 | chr15:40968414 | G/A | 3.65E-6 | 214 | 10.7 | 6.77 | 6.13 | KM Plot |
| BLCA | rs140282061 | chr16:531121 | TTTAA/T | 1.99E-8 | 214 | 10.1 | 6.97 | 2.12 | KM Plot |
| BLCA | rs140463081 | chr1:150847977 | A/AAC | 0 | 213 | 9.08 | 13.17 | 2.17 | KM Plot |
| BLCA | rs1408034 | chr11:34475788 | T/C | 3.13E-5 | 216 | 10.7 | 7.43 | 3.3 | KM Plot |
| BLCA | rs1408036 | chr11:34469775 | A/C | 3.06E-5 | 215 | 10.7 | 7.88 | 3.3 | KM Plot |
| BLCA | rs140914341 | chr15:40967798 | A/C | 3.65E-6 | 214 | 10.7 | 6.77 | 6.13 | KM Plot |
| BLCA | rs141130902 | chr15:40937115 | CT/C | 4.13E-6 | 214 | 10.72 | 6.67 | 6.13 | KM Plot |
| BLCA | rs141508543 | chr8:50764870 | GACAA/G | 2.43E-5 | 216 | 10.53 | 9.05 | 1.87 | KM Plot |
| BLCA | rs141726734 | chr8:50791420 | C/G | 4.41E-5 | 209 | 9.43 | 9.47 | 1.87 | KM Plot |
| BLCA | rs142689702 | chr16:531056 | G/A | 2.38E-8 | 212 | 10.53 | 6.8 | 2.12 | KM Plot |
| BLCA | rs143086104 | chr15:40879237 | C/T | 4.13E-6 | 213 | 10.73 | 6.67 | 6.13 | KM Plot |
| BLCA | rs143407178 | chr8:50764329 | C/CA | 0 | 215 | 10.53 | 9.05 | 0.98 | KM Plot |